3D structure

PDB id
7ASO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S after 30 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ASO_100 not in the Motif Atlas
Homologous match to IL_4WF9_093
Geometric discrepancy: 0.2282
The information below is about IL_4WF9_093
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

7ASO|1|Y|C|2493
7ASO|1|Y|C|2494
7ASO|1|Y|A|2495
7ASO|1|Y|A|2496
7ASO|1|Y|G|2497
*
7ASO|1|Y|C|2507
7ASO|1|Y|G|2508
7ASO|1|Y|A|2509
7ASO|1|Y|C|2510
7ASO|1|Y|G|2511

Current chains

Chain Y
23S

Nearby chains

Chain P
50S ribosomal protein L16
Chain k
50S ribosomal protein L36

Coloring options:


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