IL_7ASO_130
3D structure
- PDB id
- 7ASO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 30 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CAGAG*UGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ASO_130 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3312
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
7ASO|1|Y|C|580
7ASO|1|Y|A|581
7ASO|1|Y|G|582
7ASO|1|Y|A|583
7ASO|1|Y|G|584
*
7ASO|1|Y|U|597
7ASO|1|Y|G|598
7ASO|1|Y|A|599
7ASO|1|Y|U|600
7ASO|1|Y|G|601
Current chains
- Chain Y
- 23S
Nearby chains
- Chain M
- 50S ribosomal protein L13
- Chain S
- 50S ribosomal protein L20
Coloring options: