IL_7ASO_143

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_143 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1098

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7ASO|1|Y|G|1710
7ASO|1|Y|G|1711
7ASO|1|Y|A|1712
7ASO|1|Y|A|1713
7ASO|1|Y|C|1714
7ASO|1|Y|U|1715
7ASO|1|Y|C|1716
7ASO|1|Y|G|1717
7ASO|1|Y|G|1718
*
7ASO|1|Y|C|2017
7ASO|1|Y|U|2018
7ASO|1|Y|G|2019
7ASO|1|Y|U|2020
7ASO|1|Y|C|2021

Current chains

Chain Y

23S

Nearby chains

Chain N

50S ribosomal protein L14

Chain e

50S ribosomal protein L3