IL_7ASP_006
3D structure
- PDB id
- 7ASP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 50 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ASP_006 not in the Motif Atlas
- Geometric match to IL_5NS3_002
- Geometric discrepancy: 0.1514
- The information below is about IL_5NS3_002
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
7ASP|1|3|U|32
7ASP|1|3|U|33
7ASP|1|3|C|34
7ASP|1|3|C|35
7ASP|1|3|C|36
*
7ASP|1|3|G|42
7ASP|1|3|A|43
7ASP|1|3|A|44
7ASP|1|3|C|45
7ASP|1|3|A|46
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L18
- Chain Y
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: