IL_7ASP_008

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UAAC*GA

Length

6 nucleotides

Bulged bases

7ASP|1|X|A|129, 7ASP|1|X|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_008 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.4313

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7ASP|1|X|U|128
7ASP|1|X|A|129
7ASP|1|X|A|130
7ASP|1|X|C|131
*
7ASP|1|X|G|239
7ASP|1|X|A|240

Current chains

Chain X

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S16

Chain h

30S ribosomal protein S17