IL_7ASP_052

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UGAUG*UUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_052 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.1678

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

7ASP|1|Y|U|889
7ASP|1|Y|G|890
7ASP|1|Y|A|891
7ASP|1|Y|U|892
7ASP|1|Y|G|893
*
7ASP|1|Y|U|975
7ASP|1|Y|U|976
7ASP|1|Y|A|977
7ASP|1|Y|A|978

Current chains

Chain Y

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L33,50S ribosomal protein L30