3D structure

PDB id
7ASP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S after 50 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.86 Å

Loop

Sequence
GGAAAAG*CGAAAAUGUACCGGGGC
Length
24 nucleotides
Bulged bases
7ASP|1|Y|A|1171, 7ASP|1|Y|U|1174, 7ASP|1|Y|C|1178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ASP_062 not in the Motif Atlas
Geometric match to IL_4WF9_040
Geometric discrepancy: 0.3237
The information below is about IL_4WF9_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

7ASP|1|Y|G|1068
7ASP|1|Y|G|1069
7ASP|1|Y|A|1070
7ASP|1|Y|A|1071
7ASP|1|Y|A|1072
7ASP|1|Y|A|1073
7ASP|1|Y|G|1074
*
7ASP|1|Y|C|1168
7ASP|1|Y|G|1169
7ASP|1|Y|A|1170
7ASP|1|Y|A|1171
7ASP|1|Y|A|1172
7ASP|1|Y|A|1173
7ASP|1|Y|U|1174
7ASP|1|Y|G|1175
7ASP|1|Y|U|1176
7ASP|1|Y|A|1177
7ASP|1|Y|C|1178
7ASP|1|Y|C|1179
7ASP|1|Y|G|1180
7ASP|1|Y|G|1181
7ASP|1|Y|G|1182
7ASP|1|Y|G|1183
7ASP|1|Y|C|1184

Current chains

Chain Y
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain D
50S ribosomal protein L3
Chain H
50S ribosomal protein L13
Chain K
50S ribosomal protein L16

Coloring options:


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