3D structure

PDB id
7ASP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S after 50 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.86 Å

Loop

Sequence
GA*UACC
Length
6 nucleotides
Bulged bases
7ASP|1|Y|A|2466
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ASP_096 not in the Motif Atlas
Homologous match to IL_7RQB_081
Geometric discrepancy: 0.2081
The information below is about IL_7RQB_081
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_42622.4
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
33

Unit IDs

7ASP|1|Y|G|2097
7ASP|1|Y|A|2098
*
7ASP|1|Y|U|2465
7ASP|1|Y|A|2466
7ASP|1|Y|C|2467
7ASP|1|Y|C|2468

Current chains

Chain Y
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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