IL_7ASP_120

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

7ASP|1|Y|A|2899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_120 not in the Motif Atlas

Homologous match to IL_5J7L_352

Geometric discrepancy: 0.1274

The information below is about IL_5J7L_352

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

7ASP|1|Y|G|2858
7ASP|1|Y|G|2859
*
7ASP|1|Y|U|2898
7ASP|1|Y|A|2899
7ASP|1|Y|C|2900

Current chains

Chain Y

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L17