IL_7ASP_142

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_142 not in the Motif Atlas

Geometric match to IL_2H1M_002

Geometric discrepancy: 0.1654

The information below is about IL_2H1M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7ASP|1|Y|C|2234
7ASP|1|Y|A|2235
7ASP|1|Y|C|2236
*
7ASP|1|Y|G|2242
7ASP|1|Y|U|2243
7ASP|1|Y|G|2244

Current chains

Chain Y

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain V

50S ribosomal protein L28