IL_7AZO_015

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_015 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.1163

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

7AZO|1|16SA|G|1012
7AZO|1|16SA|C|1013
7AZO|1|16SA|A|1014
7AZO|1|16SA|A|1015
7AZO|1|16SA|U|1016
*
7AZO|1|16SA|A|1030
7AZO|1|16SA|C|1031

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain L9B

50S ribosomal protein L9

Chain S16A

30S ribosomal protein S16