IL_7AZO_025

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_025 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.0855

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7AZO|1|16SA|G|1226
7AZO|1|16SA|U|1227
*
7AZO|1|16SA|A|1269
7AZO|1|16SA|U|1270
7AZO|1|16SA|A|1271
7AZO|1|16SA|C|1272

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S17A

30S ribosomal protein S17

Chain S8A

30S ribosomal protein S8