IL_7AZO_033

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0577

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7AZO|1|16SA|C|1408
7AZO|1|16SA|A|1409
7AZO|1|16SA|A|1410
7AZO|1|16SA|A|1411
7AZO|1|16SA|C|1412
*
7AZO|1|16SA|G|1428
7AZO|1|16SA|G|1429
7AZO|1|16SA|U|1430
7AZO|1|16SA|A|1431
7AZO|1|16SA|G|1432

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain S11A

30S ribosomal protein S11