IL_7AZO_057

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_057 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0671

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7AZO|1|16SA|G|2044
7AZO|1|16SA|G|2045
7AZO|1|16SA|A|2046
7AZO|1|16SA|G|2047
*
7AZO|1|16SA|U|2104
7AZO|1|16SA|G|2105
7AZO|1|16SA|A|2106
7AZO|1|16SA|C|2107

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain S12A

30S ribosomal protein S12