IL_7AZO_078

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

7AZO|1|16SB|G|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_078 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.5551

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7AZO|1|16SB|G|1086
7AZO|1|16SB|G|1087
7AZO|1|16SB|A|1088
7AZO|1|16SB|C|1089
7AZO|1|16SB|G|1090
*
7AZO|1|16SB|C|1113
7AZO|1|16SB|G|1114
7AZO|1|16SB|G|1115
7AZO|1|16SB|U|1116
7AZO|1|16SB|A|1117
7AZO|1|16SB|C|1118

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16

Chain S4B

30S ribosomal protein S4