IL_7AZO_087

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_087 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.1088

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

7AZO|1|16SB|G|1283
7AZO|1|16SB|A|1284
*
7AZO|1|16SB|U|1380
7AZO|1|16SB|G|1381
7AZO|1|16SB|A|1382
7AZO|1|16SB|C|1383

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S15B

30S ribosomal protein S15

Chain S8B

30S ribosomal protein S8