IL_7AZO_099

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_099 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.1975

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7AZO|1|16SB|G|1616
7AZO|1|16SB|A|1617
7AZO|1|16SB|C|1618
7AZO|1|16SB|A|1619
7AZO|1|16SB|U|1620
*
7AZO|1|16SB|A|1672
7AZO|1|16SB|C|1673

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S14B

30S ribosomal protein S14 type Z