IL_7AZO_116

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_116 not in the Motif Atlas

Homologous match to IL_5J7L_061

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7AZO|1|16SB|C|2040
7AZO|1|16SB|A|2041
7AZO|1|16SB|U|2042
*
7AZO|1|16SB|G|2109
7AZO|1|16SB|G|2110
7AZO|1|16SB|G|2111

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain 23SB

Large subunit ribosomal RNA; LSU rRNA

Chain S12B

30S ribosomal protein S12