IL_7AZO_118

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_118 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0783

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7AZO|1|16SB|C|2059
7AZO|1|16SB|G|2060
7AZO|1|16SB|A|2061
7AZO|1|16SB|A|2062
7AZO|1|16SB|G|2063
*
7AZO|1|16SB|C|2089
7AZO|1|16SB|G|2090
7AZO|1|16SB|A|2091
7AZO|1|16SB|G|2092

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain 23SB

Large subunit ribosomal RNA; LSU rRNA

Chain L19B

50S ribosomal protein L19

Chain S20B

30S ribosomal protein S20