IL_7AZO_122

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_122 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.0504

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7AZO|1|23SA|G|24
7AZO|1|23SA|U|25
7AZO|1|23SA|G|26
7AZO|1|23SA|G|27
7AZO|1|23SA|A|28
7AZO|1|23SA|U|29
7AZO|1|23SA|G|30
*
7AZO|1|23SA|C|537
7AZO|1|23SA|U|538
7AZO|1|23SA|G|539
7AZO|1|23SA|A|540
7AZO|1|23SA|A|541
7AZO|1|23SA|A|542
7AZO|1|23SA|C|543

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L20A

50S ribosomal protein L20

Chain L22A

50S ribosomal protein L22

Chain L32A

50S ribosomal protein L32