IL_7AZO_155

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_155 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.0777

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7AZO|1|23SA|C|1052
7AZO|1|23SA|C|1053
7AZO|1|23SA|C|1054
7AZO|1|23SA|C|1055
7AZO|1|23SA|C|1056
7AZO|1|23SA|A|1057
7AZO|1|23SA|A|1058
7AZO|1|23SA|G|1059
*
7AZO|1|23SA|C|1199
7AZO|1|23SA|G|1200

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L13A

50S ribosomal protein L13

Chain L20A

50S ribosomal protein L20