IL_7AZO_163

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

7AZO|1|23SA|U|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_163 not in the Motif Atlas

Geometric match to IL_7RQB_046

Geometric discrepancy: 0.2372

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7AZO|1|23SA|C|1250
7AZO|1|23SA|G|1251
7AZO|1|23SA|A|1252
7AZO|1|23SA|U|1253
7AZO|1|23SA|G|1254
*
7AZO|1|23SA|U|1289
7AZO|1|23SA|A|1290
7AZO|1|23SA|A|1291
7AZO|1|23SA|G|1292

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L15A

50S ribosomal protein L15

Chain L4A

50S ribosomal protein L4