IL_7AZO_165

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

7AZO|1|23SA|A|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_165 not in the Motif Atlas

Geometric match to IL_7RQB_048

Geometric discrepancy: 0.1027

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

7AZO|1|23SA|G|1267
7AZO|1|23SA|A|1268
7AZO|1|23SA|C|1269
*
7AZO|1|23SA|G|1278
7AZO|1|23SA|C|1279

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L20A

50S ribosomal protein L20

Chain L21A

50S ribosomal protein L21