IL_7AZO_181

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_181 not in the Motif Atlas

Geometric match to IL_7RQB_064

Geometric discrepancy: 0.0589

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7AZO|1|23SA|G|1701
7AZO|1|23SA|A|1702
7AZO|1|23SA|G|1703
7AZO|1|23SA|A|1704
7AZO|1|23SA|A|1705
7AZO|1|23SA|C|1706
*
7AZO|1|23SA|G|2029
7AZO|1|23SA|A|2030
7AZO|1|23SA|C|2031

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L17A

50S ribosomal protein L17

Chain L3A

50S ribosomal protein L3