IL_7AZO_185

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7AZO|1|23SA|G|1749

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_185 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1053

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7AZO|1|23SA|C|1736
7AZO|1|23SA|G|1737
7AZO|1|23SA|U|1738
7AZO|1|23SA|A|1739
7AZO|1|23SA|A|1740
7AZO|1|23SA|C|1741
*
7AZO|1|23SA|G|1746
7AZO|1|23SA|G|1747
7AZO|1|23SA|A|1748
7AZO|1|23SA|G|1749
7AZO|1|23SA|A|1750
7AZO|1|23SA|A|1751
7AZO|1|23SA|G|1752

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 16SA

Small subunit ribosomal RNA; SSU rRNA

Chain L2A

50S ribosomal protein L2