IL_7AZO_206

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_206 not in the Motif Atlas

Geometric match to IL_7RQB_089

Geometric discrepancy: 0.0549

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

7AZO|1|23SA|C|2365
7AZO|1|23SA|G|2366
7AZO|1|23SA|A|2367
7AZO|1|23SA|G|2368
*
7AZO|1|23SA|C|2379
7AZO|1|23SA|G|2380
7AZO|1|23SA|A|2381
7AZO|1|23SA|G|2382

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L27A

50S ribosomal protein L27

Chain L35A

50S ribosomal protein L35