IL_7AZO_211

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_211 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1596

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

7AZO|1|23SA|A|2474
7AZO|1|23SA|U|2475
7AZO|1|23SA|C|2476
*
7AZO|1|23SA|G|2504
7AZO|1|23SA|G|2505
7AZO|1|23SA|U|2506
7AZO|1|23SA|U|2507
7AZO|1|23SA|U|2508

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain ASIA

Transfer RNA; tRNA

Chain L16A

50S ribosomal protein L16

Chain L27A

50S ribosomal protein L27