IL_7AZO_215

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

7AZO|1|23SA|A|2587, 7AZO|1|23SA|C|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_215 not in the Motif Atlas

Geometric match to IL_7RQB_098

Geometric discrepancy: 0.0833

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7AZO|1|23SA|C|2527
7AZO|1|23SA|G|2528
*
7AZO|1|23SA|C|2586
7AZO|1|23SA|A|2587
7AZO|1|23SA|C|2588
7AZO|1|23SA|G|2589

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain ASIA

Transfer RNA; tRNA

Chain L13A

50S ribosomal protein L13

Chain L27A

50S ribosomal protein L27

Chain L3A

50S ribosomal protein L3