IL_7AZO_217

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAA*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_217 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2043

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

7AZO|1|23SA|G|2603
7AZO|1|23SA|A|2604
7AZO|1|23SA|A|2605
*
7AZO|1|23SA|U|2619
7AZO|1|23SA|PSU|2620
7AZO|1|23SA|C|2621

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L2A

50S ribosomal protein L2