IL_7AZO_224

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

7AZO|1|23SA|A|2781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_224 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.0654

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7AZO|1|23SA|G|2753
7AZO|1|23SA|A|2754
7AZO|1|23SA|U|2755
7AZO|1|23SA|A|2756
7AZO|1|23SA|A|2757
7AZO|1|23SA|C|2758
*
7AZO|1|23SA|G|2778
7AZO|1|23SA|G|2779
7AZO|1|23SA|A|2780
7AZO|1|23SA|A|2781
7AZO|1|23SA|G|2782
7AZO|1|23SA|C|2783

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L13A

50S ribosomal protein L13

Chain L6A

50S ribosomal protein L6