IL_7AZO_226

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_226 not in the Motif Atlas

Geometric match to IL_7RQB_109

Geometric discrepancy: 0.0668

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7AZO|1|23SA|G|2856
7AZO|1|23SA|G|2857
7AZO|1|23SA|G|2858
7AZO|1|23SA|G|2859
*
7AZO|1|23SA|C|2883
7AZO|1|23SA|C|2884
7AZO|1|23SA|G|2885
7AZO|1|23SA|A|2886
7AZO|1|23SA|C|2887

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L17A

50S ribosomal protein L17

Chain L19A

50S ribosomal protein L19

Chain L3A

50S ribosomal protein L3