IL_7AZO_256

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_256 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3703

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7AZO|1|23SB|G|924
7AZO|1|23SB|C|925
7AZO|1|23SB|U|926
7AZO|1|23SB|A|927
7AZO|1|23SB|G|928
*
7AZO|1|23SB|C|946
7AZO|1|23SB|A|947
7AZO|1|23SB|A|948
7AZO|1|23SB|A|949
7AZO|1|23SB|C|950

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA

Chain L16B

50S ribosomal protein L16

Chain L25B

50S ribosomal protein L25