IL_7AZO_282

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_282 not in the Motif Atlas

Geometric match to IL_7RQB_060

Geometric discrepancy: 0.1212

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7AZO|1|23SB|A|1519
7AZO|1|23SB|G|1520
7AZO|1|23SB|A|1521
7AZO|1|23SB|A|1522
7AZO|1|23SB|G|1523
*
7AZO|1|23SB|U|1569
7AZO|1|23SB|G|1570
7AZO|1|23SB|G|1571
7AZO|1|23SB|U|1572

Current chains

Chain 23SB

23S rRNA

Nearby chains