IL_7AZO_292

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

7AZO|1|23SB|G|1835, 7AZO|1|23SB|G|1850, 7AZO|1|23SB|U|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_292 not in the Motif Atlas

Geometric match to IL_7RQB_070

Geometric discrepancy: 0.0618

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7AZO|1|23SB|U|1832
7AZO|1|23SB|G|1833
7AZO|1|23SB|C|1834
7AZO|1|23SB|G|1835
7AZO|1|23SB|A|1836
7AZO|1|23SB|A|1837
7AZO|1|23SB|C|1838
*
7AZO|1|23SB|G|1847
7AZO|1|23SB|G|1848
7AZO|1|23SB|A|1849
7AZO|1|23SB|G|1850
7AZO|1|23SB|G|1851
7AZO|1|23SB|U|1852
7AZO|1|23SB|A|1853
7AZO|1|23SB|U|1854
7AZO|1|23SB|A|1855

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 16SB

Small subunit ribosomal RNA; SSU rRNA

Chain L2B

50S ribosomal protein L2