IL_7AZO_303

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7AZO|1|23SB|A|2454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_303 not in the Motif Atlas

Geometric match to IL_5TBW_094

Geometric discrepancy: 0.0636

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7AZO|1|23SB|G|2095
7AZO|1|23SB|A|2096
*
7AZO|1|23SB|U|2453
7AZO|1|23SB|A|2454
7AZO|1|23SB|C|2455
7AZO|1|23SB|C|2456

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L2B

50S ribosomal protein L2

Chain PSIB

Transfer RNA; tRNA