IL_7AZO_315

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_315 not in the Motif Atlas

Geometric match to IL_7A0S_085

Geometric discrepancy: 0.1441

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

7AZO|1|23SB|U|2472
7AZO|1|23SB|G|2473
7AZO|1|23SB|A|2474
*
7AZO|1|23SB|U|2508
7AZO|1|23SB|G|2509

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA

Chain L16B

50S ribosomal protein L16

Chain L27B

50S ribosomal protein L27