IL_7AZO_317

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_317 not in the Motif Atlas

Geometric match to IL_4WF9_093

Geometric discrepancy: 0.1835

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7AZO|1|23SB|C|2481
7AZO|1|23SB|C|2482
7AZO|1|23SB|G|2483
7AZO|1|23SB|A|2484
7AZO|1|23SB|G|2485
*
7AZO|1|23SB|C|2495
7AZO|1|23SB|G|2496
7AZO|1|23SB|G|2497
7AZO|1|23SB|C|2498
7AZO|1|23SB|G|2499

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA

Chain L16B

50S ribosomal protein L16