IL_7AZO_321

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

7AZO|1|23SB|A|2557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_321 not in the Motif Atlas

Geometric match to IL_7RQB_099

Geometric discrepancy: 0.098

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

7AZO|1|23SB|U|2537
7AZO|1|23SB|G|2538
*
7AZO|1|23SB|C|2555
7AZO|1|23SB|A|2556
7AZO|1|23SB|A|2557
7AZO|1|23SB|G|2558

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L13B

50S ribosomal protein L13