IL_7AZO_325

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_325 not in the Motif Atlas

Geometric match to IL_8OI5_139

Geometric discrepancy: 0.3833

The information below is about IL_8OI5_139

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

7AZO|1|23SB|C|2666
7AZO|1|23SB|C|2667
7AZO|1|23SB|U|2668
7AZO|1|23SB|A|2669
7AZO|1|23SB|G|2670
7AZO|1|23SB|U|2671
7AZO|1|23SB|A|2672
7AZO|1|23SB|C|2673
*
7AZO|1|23SB|G|2678
7AZO|1|23SB|G|2679
7AZO|1|23SB|A|2680
7AZO|1|23SB|C|2681
7AZO|1|23SB|C|2682
7AZO|1|23SB|G|2683
7AZO|1|23SB|G|2684

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L6B

50S ribosomal protein L6