IL_7AZO_347

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

7AZO|1|16SA|U|1787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_347 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.1773

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7AZO|1|16SA|C|1786
7AZO|1|16SA|U|1787
7AZO|1|16SA|G|1788
7AZO|1|16SA|C|1789
*
7AZO|1|16SA|G|1802
7AZO|1|16SA|A|1803
7AZO|1|16SA|G|1804
7AZO|1|16SA|G|1805
7AZO|1|16SA|A|1806
7AZO|1|16SA|A|1807
7AZO|1|16SA|G|1808

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S2A

30S ribosomal protein S2

Chain S9A

30S ribosomal protein S9