IL_7AZO_348

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_348 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0573

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7AZO|1|16SA|G|2029
7AZO|1|16SA|4OC|2030
7AZO|1|16SA|C|2031
7AZO|1|16SA|5MC|2032
*
7AZO|1|16SA|G|2120
7AZO|1|16SA|UR3|2121
7AZO|1|16SA|A|2122
7AZO|1|16SA|A|2123
7AZO|1|16SA|C|2124

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain MRNA

RNA (30-MER)

Chain PSIA

Transfer RNA; tRNA

Chain S12A

30S ribosomal protein S12