IL_7AZO_356

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_356 not in the Motif Atlas

Homologous match to IL_4LFB_069

Geometric discrepancy: 0.1237

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7AZO|1|16SB|G|2033
7AZO|1|16SB|U|2034
7AZO|1|16SB|5MC|2035
*
7AZO|1|16SB|G|2117
7AZO|1|16SB|U|2118
7AZO|1|16SB|C|2119

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain 23SB

Large subunit ribosomal RNA; LSU rRNA

Chain ASIB

Transfer RNA; tRNA

Chain MRNB

RNA (30-MER)