IL_7AZO_360

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_360 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0604

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7AZO|1|23SA|G|1716
7AZO|1|23SA|G|1717
7AZO|1|23SA|A|1718
7AZO|1|23SA|A|1719
7AZO|1|23SA|C|1720
7AZO|1|23SA|U|1721
7AZO|1|23SA|C|1722
7AZO|1|23SA|U|1723
7AZO|1|23SA|G|1724
*
7AZO|1|23SA|C|2015
7AZO|1|23SA|U|2016
7AZO|1|23SA|G|2017
7AZO|1|23SA|U|2018
7AZO|1|23SA|C|2019

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L14A

50S ribosomal protein L14

Chain L3A

50S ribosomal protein L3