IL_7AZO_369

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZO_369 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.2994

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

7AZO|1|23SB|C|2164
7AZO|1|23SB|C|2165
7AZO|1|23SB|G|2166
*
7AZO|1|23SB|U|2175
7AZO|1|23SB|G|2176
7AZO|1|23SB|G|2177

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain 16SA

Small subunit ribosomal RNA; SSU rRNA