IL_7AZS_009

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACAAC*GCUAAUCC

Length

15 nucleotides

Bulged bases

7AZS|1|16SA|U|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_009 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2755

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7AZS|1|16SA|G|787
7AZS|1|16SA|G|788
7AZS|1|16SA|A|789
7AZS|1|16SA|C|790
7AZS|1|16SA|A|791
7AZS|1|16SA|A|792
7AZS|1|16SA|C|793
*
7AZS|1|16SA|G|808
7AZS|1|16SA|C|809
7AZS|1|16SA|U|810
7AZS|1|16SA|A|811
7AZS|1|16SA|A|812
7AZS|1|16SA|U|813
7AZS|1|16SA|C|814
7AZS|1|16SA|C|815

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S20A

30S ribosomal protein S20