IL_7AZS_019

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1149

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7AZS|1|16SA|G|1090
7AZS|1|16SA|A|1091
7AZS|1|16SA|A|1092
7AZS|1|16SA|A|1093
7AZS|1|16SA|C|1094
7AZS|1|16SA|C|1095
*
7AZS|1|16SA|G|1107
7AZS|1|16SA|A|1108
7AZS|1|16SA|C|1109
7AZS|1|16SA|U|1110
7AZS|1|16SA|G|1111
7AZS|1|16SA|A|1112
7AZS|1|16SA|C|1113

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S16A

30S ribosomal protein S16