IL_7AZS_020

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_020 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0795

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7AZS|1|16SA|C|1133
7AZS|1|16SA|G|1134
7AZS|1|16SA|G|1135
7AZS|1|16SA|C|1136
7AZS|1|16SA|C|1137
7AZS|1|16SA|A|1138
7AZS|1|16SA|A|1139
7AZS|1|16SA|C|1140
*
7AZS|1|16SA|G|1169
7AZS|1|16SA|G|1170

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S12A

30S ribosomal protein S12

Chain S4A

30S ribosomal protein S4

Chain S5A

30S ribosomal protein S5