IL_7AZS_034

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0717

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7AZS|1|16SA|G|1510
7AZS|1|16SA|G|1511
7AZS|1|16SA|A|1512
7AZS|1|16SA|G|1513
7AZS|1|16SA|U|1514
7AZS|1|16SA|A|1515
7AZS|1|16SA|C|1516
7AZS|1|16SA|G|1517
*
7AZS|1|16SA|U|1528
7AZS|1|16SA|G|1529
7AZS|1|16SA|A|1530
7AZS|1|16SA|A|1531
7AZS|1|16SA|A|1532
7AZS|1|16SA|C|1533

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S12A

30S ribosomal protein S12

Chain S17A

30S ribosomal protein S17