IL_7AZS_060

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

7AZS|1|16SA|G|2071

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_060 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.4019

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7AZS|1|16SA|C|2068
7AZS|1|16SA|G|2069
7AZS|1|16SA|G|2070
7AZS|1|16SA|G|2071
7AZS|1|16SA|A|2072
7AZS|1|16SA|G|2073
*
7AZS|1|16SA|C|2082
7AZS|1|16SA|A|2083
7AZS|1|16SA|G|2084

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain 23SA

Large subunit ribosomal RNA; LSU rRNA

Chain L19A

50S ribosomal protein L19

Chain S20A

30S ribosomal protein S20