IL_7AZS_075

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_075 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1126

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7AZS|1|16SB|G|1012
7AZS|1|16SB|C|1013
7AZS|1|16SB|A|1014
7AZS|1|16SB|A|1015
7AZS|1|16SB|U|1016
*
7AZS|1|16SB|A|1030
7AZS|1|16SB|C|1031

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S16B

30S ribosomal protein S16